Coordinator: Giuseppe D'Auria (dauria_giu@gva.es)

The course is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning the basic computational skills required to pursue their own genomic analyses. The module will be eminently practical and hands-on, and will teach participants skills ranging from the installation and basic use of Linux systems to the building of analysis pipelines and the utilization of Qiime2 as platform for metataxonomy analysis. Theoretical lectures and practical hands-on sessions will be taught by FISABIO researchers and informaticians.

Official language: English.
 

Module costs: 350 euros

REGISTRATION

Instructors:

 

Giuseppe D'Auria PhD., University of Valencia, Bioinformatician at Institutional Chair FISABIO - University of Valencia giuseppe.dauria@uv.es	David Perez-Villarroya MS. in Bioinformatics,FISABIO-SP, Bioinformatics technician at   Sequencing and Bioinformatics Service. perez_davvil@gva.es	Rosario Gil Associate professor, University of Valencia. rosario.gil@uv.es
Pascual Asensi Systems Administrator, University of Valencia, Genomics and Health Area. Pascual.Asensi@uv.es	Mariana Reyes MS in molecular, cellular biology  and genetics, FISABIO-SP,  Bioinformatician at Sequencing and  Bioinformatics Service.

 

Course program Summer School 2020:

Monday July ^st: 

09:15 – 10:00 Next generation sequencing technologies: the birth of the Genomics Era
        Rosario Gil

10:00 – 10:45 Comparative genomics for genome annotation and functional analysis.
        Rosario Gil

Break

11:00 – 11:45 NGS in microbial ecology (Taxonomy and metagenomics).
        Rosario Gil

11:45 – 13:00 Linux system, installing a new distro I.
        Pascual Asensi

Lunch

14:30 – 16:00 Linux system, installing a new distro II.
        Pascual Asensi

16:00 – 16:30 From office automation to computation for NGS.
        Giuseppe D'Auria

16:30 – 17:30 Unix commands, moving around the system, practice I.
        David Perez-Villarroya


Tuesday 7^th:

09:00 – 10:45 Unix commands, moving around the system, practice II.
        David Perez-Villarroya

Break

11:00 – 12:00  One command line pipelines, practice.
      David Perez-Villarroya

12.00 – 13.00 NGS Bioinformatics formats, managing data.
        David Perez-Villarroya

Lunch

14.30 – 15.30 NGS Bioinformatics formats, managing data, practice.
        Giuseppe D'Auria

15:30 – 16:30 Genome Assembly and mapping.
        Giuseppe D'Auria

16:30 – 17:30  Genome assembly, practice.
        Giuseppe D'Auria

Wednesday July 8^th:

09:00 – 10:45 Genome mapping, practice.
        Giuseppe D'Auria

Break

11:00 – 12:00 Qiime2:  Introduction. How to install the environment, applications.
        Mariana Reyes

12:00 – 13:00 Qiime2: data formats and operations.
         Mariana Reyes

Lunch

Thursday July 9^th:

Friday July 10^th:

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