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SUMMER SCHOOL - Module 3 |
| Dates: July 6th- July 10th 2020 Coordinator: Giuseppe D'Auria (dauria_giu@gva.es) Official language: English. Module costs: 350 euros Instructors:
Course program Summer School 2020: Monday July st: 10:00 – 10:45 Comparative genomics for genome annotation and functional analysis. Break 11:00 – 11:45 NGS in microbial ecology (Taxonomy and metagenomics). 11:45 – 13:00 Linux system, installing a new distro I. Lunch 14:30 – 16:00 Linux system, installing a new distro II. 16:00 – 16:30 From office automation to computation for NGS. 16:30 – 17:30 Unix commands, moving around the system, practice I. Break 11:00 – 12:00 One command line pipelines, practice. 12.00 – 13.00 NGS Bioinformatics formats, managing data. Lunch 14.30 – 15.30 NGS Bioinformatics formats, managing data, practice. 15:30 – 16:30 Genome Assembly and mapping. 16:30 – 17:30 Genome assembly, practice. 09:00 – 10:45 Genome mapping, practice. Break 11:00 – 12:00 Qiime2: Introduction. How to install the environment, applications. 12:00 – 13:00 Qiime2: data formats and operations. Lunch 14:30 – 15:30 Qiime2: Hands-on section. Mariana Reyes 15:30 – 16:30 Qiime2: Denoising. Mariana Reyes 16:30 – 17:30 Qiime2: Hands-on section. Mariana Reyes Thursday July 9th: 09:00 – 10:45 Qiime2: Taxonomic annotation and descriptive statistics. Mariana Reyes Break 11:00 – 12:00 Qiime2: Alignment and phylogenetic reconstruction. Mariana Reyes 12:00 – 13:00 Qiime2: Qiime2: Hands-on section Mariana Reyes Lunch 14:30 – 15:40 Qiime2: Differential abundance analysis. Mariana Reyes 16:00 – 17:30 Qiime2: Qiime2: Hands-on section. Mariana Reyes Friday July 10th: 09:00 – 10:45 Students Projects. Giuseppe D'Auria Break 11:00 – 12:00 Tests and questionnaires. Giuseppe D'Auria 12:00 – 13:00 NGS sequencing and beyond. Rosario Gil | ||||||