Coordinator: Giuseppe D'Auria (dauria_giu@gva.es)
The course is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning the basic computational skills required to pursue their own genomic analyses. The module will be eminently practical and hands-on, and will teach participants skills ranging from the installation and basic use of Linux systems to the building of analysis pipelines and the utilization of the main functions available in the "R" platform for statistical analysis of genomes and metagenomes. Theoretical lectures and practical hands-on sessions will be taught by FISABIO researchers and informaticians.
Official language: English.
Module costs: 350 euros
PREREGISTRATION
Instructors:
Alejandro Artacho. MS in Bioinformatics, FISABIO-SP, Bioinformatician at Genomics and Health Area.
Pascual Asensi. Systems Administrator, University of Valencia, Genomics and Health Area.
Giuseppe D'Auria. PhD., FISABIO-SP, Coordinator of Sequencing and Bioinformatics Service.
Rosario Gil. Associate professor, University of Valencia.
David Perez-Villarroya. MS. in Bioinformatics, FISABIO-SP, Bioinformatics technician at Sequencing and Bioinformatics Service.
| Alejandro Artacho MS in Bioinformatics, FISABIO-SP, Bioinformatician at Genomics and Health Area.  artacho_ale@gva.es | David Perez-Villarroya MS. in Bioinformatics,FISABIO-SP, Bioinformatics technician at Sequencing and Bioinformatics Service.  perez_davvil@gva.es | Giuseppe D'Auria PhD., FISABIO-SP, Coordinator of Sequencing and Bioinformatics Service.  dauria_giu@gva.es |
| Rosario Gil Associate professor, University of Valencia.  rosario.gil@uv.es | Pascual Asensi Systems Administrator, University of Valencia, Genomics and Health Area. Pascual.Asensi@uv.es | |
Course program Summer School 2018:
Monday July 9th:
09:15 – 10:00 Next generation sequencing technologies: the birth of the Genomics Era
Rosario Gil
10:00 – 10:45 Comparative genomics for genome annotation and functional analysis.
Rosario Gil
Break
11:00 – 11:45 NGS in microbial ecology (Taxonomy and metagenomics).
Rosario Gil
11:45 – 13:00 Linux system, installing a new distro I.
Pascual Asensi
Lunch
14:30 – 16:00 Linux system, installing a new distro II.
Pascual Asensi
16:00 – 16:30 From office automation to computation for NGS.
Giuseppe D'Auria
16:30 – 17:30 Unix commands, moving around the system, practice I.
David Perez-Villarroya
Tuesday July 10th:
09:00 – 10:45 Unix commands, moving around the system, practice II.
David Perez-Villarroya
Break
11:00 – 12:00 One command line pipelines, practice.
Giuseppe D'Auria
12.00 – 13.00 NGS Bioinformatics formats, managing data.
Giuseppe D'Auria
Lunch
14.30 – 15.30 NGS Bioinformatics formats, managing data, practice.
Giuseppe D'Auria
15:30 – 16:30 Genome Assembly and mapping.
Giuseppe D'Auria
16:30 – 17:30 Genome assembly, practice.
Giuseppe D'Auria
Wednesday July 11th:
09:00 – 10:45 Genome mapping, practice.
Giuseppe D'Auria
Break
11:00 – 12:00 Introduction to "R". How to install the environment, applications.
Alejandro Artacho
12:00 – 13:00 R data formats and operations, practice I.
Alejandro Artacho
Lunch
14:30 – 16:30 R data formats and operations, practice II.
Alejandro Artacho
16:30 – 17:30 R programming for bioinformatics.
Alejandro Artacho
Thursday July 12th:
09:00 – 10:45 R programming for bioinformatics, practice I.
Alejandro Artacho
Break
11:00 – 13:00 R programming for bioinformatics, practice II.
Alejandro Artacho
Lunch
14:30 – 16:00 R practice and tutouring.
Alejandro Artacho
16:00 – 17:30 R practice and tutouring.
David Perez-Villarroya
Friday July 13th:
09:00 – 10:45 Students Projects.
Giuseppe D'Auria
Break
11:00 – 12:00 Tests and questionnaires.
Giuseppe D'Auria
12:00 – 13:00 NGS sequencing and beyond
Rosario Gil
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